RetrogeneDB ID: | retro_mmus_2985 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:6022660..6023038(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSMUSG00000026064 | ||
Aliases: | Ptp4a1, AA415290, AU019864, C130021B01, Prl-1 | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 76.98 % |
Parental protein coverage: | 72.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVAL |
VCEA.Y.TTLVEKEGIHVL.WPFDD.APPSNQ.VDDW...........PGC.IAVHCVA.LGRAPVLV.L | |
Retrocopy | VCEAAYVTTLVEKEGIHVLEWPFDDAAPPSNQSVDDWXXXXXXXXXXXPGCRIAVHCVARLGRAPVLVVL |
Parental | ALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
ALIEGGMKYEDAVQ..R.K.RG.FNSKQLLYL.KY..KMRL.FKDSNGHR.NCCIQ | |
Retrocopy | ALIEGGMKYEDAVQLVRHKWRGDFNSKQLLYLGKYCLKMRLCFKDSNGHRSNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .42 RPM |
SRP007412_heart | 0 .00 RPM | 15 .44 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .71 RPM |
SRP007412_liver | 0 .00 RPM | 46 .56 RPM |
SRP007412_testis | 0 .00 RPM | 28 .04 RPM |