RetrogeneDB ID: | retro_fcat_1439 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:48796738..48797259(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028997 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSFCAG00000001199 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 81.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | INMARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT-YDTTLVEKEGIHVLD |
INMA..NRPA.VEVTY.NM.FLITH.PT.AT..KFIEELK.YGVTTIVRVCEAT.Y.T.LVEKEGI.VLD | |
Retrocopy | INMAPINRPALVEVTYRNMKFLITHSPTSATFDKFIEELKEYGVTTIVRVCEAT<YNTALVEKEGIQVLD |
Parental | WPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKR |
WPFD.G..PSNQIV.DWLSLV.IKF.EEPGCCI.VHCVAGLGR.PVLVALALIEGGMK.E.AVQFIRQKR | |
Retrocopy | WPFDVGSSPSNQIVEDWLSLVNIKFCEEPGCCIDVHCVAGLGRTPVLVALALIEGGMKNEHAVQFIRQKR |
Parental | RGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCI |
RGAFN.KQLLYLEKY..KMRL..K.S.GHRNNC.I | |
Retrocopy | RGAFNTKQLLYLEKYCSKMRLCYKASSGHRNNCYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 39 .25 RPM |
SRP017611_kidney | 0 .10 RPM | 7 .83 RPM |
SRP017611_liver | 0 .00 RPM | 54 .29 RPM |