RetrogeneDB ID: | retro_ggor_452 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:155953472..155953760(-) | ||
Located in intron of: | ENSGGOG00000002653 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.51 % |
Parental protein coverage: | 55.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQL |
.QIV.DWL..VKIKF.EEPGC.IAVHC..GLG.RAPVLVALALIEGGMK.EDAVQF..QKRRGAF.SKQL | |
Retrocopy | HQIVADWLHFVKIKFHEEPGCYIAVHCIVGLG-RAPVLVALALIEGGMKHEDAVQFTGQKRRGAFKSKQL |
Parental | LYLEKYRPKMRLRFKDSNGHRNNCCIQ |
LYLEKY.PKM.LRFKDSNGH.NNCCIQ | |
Retrocopy | LYLEKYHPKMWLRFKDSNGHINNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 31 .51 RPM |
SRP007412_cerebellum | 0 .12 RPM | 22 .89 RPM |
SRP007412_heart | 0 .03 RPM | 9 .41 RPM |
SRP007412_kidney | 0 .08 RPM | 61 .58 RPM |
SRP007412_liver | 0 .34 RPM | 239 .30 RPM |
SRP007412_testis | 0 .10 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_479 |
Pan troglodytes | retro_ptro_360 |
Pongo abelii | retro_pabe_255 |