RetrogeneDB ID: | retro_dord_148 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3878:67553..68072(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSDORG00000009960 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 84.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNAAXXXXXXXELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP |
MA.MNRPAPVEVTY.NMRFLITHNPT.A........ELKKYGVTTIVR.CEATYDT.LVEKEGI.VLDWP | |
Retrocopy | MAPMNRPAPVEVTYRNMRFLITHNPTSATLSRFIE-ELKKYGVTTIVRLCEATYDTALVEKEGIQVLDWP |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
FDDG..PS.QIVDDWL.LV.I.FR.EPGCCIAVHCVAGLGR.PVLVALALIE.GMKYEDAVQFIRQKRRG | |
Retrocopy | FDDGSSPSKQIVDDWLHLVNIQFRKEPGCCIAVHCVAGLGRTPVLVALALIESGMKYEDAVQFIRQKRRG |
Parental | AFNSKQLLYLEKYRPKMRLRFKDANGHRNNCCIQ |
AFNSKQLLYLEKYR.KMRLRFKD..GHRNNCC.Q | |
Retrocopy | AFNSKQLLYLEKYRSKMRLRFKDSSGHRNNCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |