RetrogeneDB ID: | retro_eeur_227 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_214361:7521..8037(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003160 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSEEUG00000006477 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 70.93 % |
Parental protein coverage: | 99.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MARMNRPAPVEV.YKNMRFLITHNPT.ATL..F.E.LKKYG.T........TYD....EK.GI.V.DWPF | |
Retrocopy | MARMNRPAPVEVSYKNMRFLITHNPTDATLSSFLEDLKKYGATXXXXXXXVTYDKAPLEKDGITVVDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDGAPP....V.DWLSL.K.KF...PG.C.AVHCVAGLGRAPVLVALALIE.GMK.ED..QFIRQKR.G. | |
Retrocopy | DDGAPPPGKVVEDWLSLLKAKFCDDPGSCVAVHCVAGLGRAPVLVALALIESGMKHEDTIQFIRQKR*GS |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCI |
.NSKQL.YLEKYRPK.RLRFKD...H...CC. | |
Retrocopy | INSKQLTYLEKYRPKQRLRFKDPPSHKTRCCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .67 RPM | 41 .90 RPM |
SRP017611_kidney | 17 .63 RPM | 19 .88 RPM |
SRP017611_liver | 1 .77 RPM | 56 .75 RPM |