RetrogeneDB ID: | retro_mmul_2526 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:111333175..111333706(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 81.46 % |
Parental protein coverage: | 88.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR |
GD.KKPKGKMSAYAFF.Q...EEHKKKN..VPVNF.EFSKKCSER.KTMS.KEK.KFDEM.K.DKV.YD. | |
Retrocopy | GDHKKPKGKMSAYAFFTQM*KEEHKKKNLGVPVNFVEFSKKCSERQKTMSWKEKTKFDEMTKVDKVHYDQ |
Parental | EMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYI |
E.KD.GPA.GGKKK.DPNA.K.P.SGFFLFCSEFRPKIKSTNPGISIG..AKK.GE.W.N..D.EKQPYI | |
Retrocopy | EIKDNGPAEGGKKK-DPNALKMPLSGFFLFCSEFRPKIKSTNPGISIGGMAKKVGEVWIN*SDREKQPYI |
Parental | TKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVE |
TKAAKLKEKYEKDVADYKSKGKFDGAKGP.KV..KKVE | |
Retrocopy | TKAAKLKEKYEKDVADYKSKGKFDGAKGPTKVTWKKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4739 |
Pan troglodytes | retro_ptro_3154 |
Gorilla gorilla | retro_ggor_2944 |
Pongo abelii | retro_pabe_3685 |