RetrogeneDB ID: | retro_mmul_1799 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:142129458..142129986(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 72.07 % |
Parental protein coverage: | 87.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.K.DPKK.KGKMS.YAFFVQ..REEHKKK..E.P..F.EFSK.CSER.KTMSGKEKSKFDEMAKADKV. | |
Retrocopy | MDKVDPKKAKGKMSTYAFFVQMGREEHKKKSLEFPIHFTEFSKNCSER*KTMSGKEKSKFDEMAKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK---KLGEMWNNLNDS |
YD.EMK.Y.P.K....KK.PNAPKRPPSGFFLFCSEF..KIKSTNP.ISIGDV.K.....G.......DS | |
Retrocopy | YDWEMKNYEPVK--ESKKNPNAPKRPPSGFFLFCSEFCHKIKSTNPDISIGDVSKSWVRCGIT*MTVKDS |
Parental | EKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
.KQPYITK...LK.K.EKDVAD.KSKGKFDG.KG..KVA | |
Retrocopy | KKQPYITKVSQLK-KCEKDVADCKSKGKFDGPKGSTKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3653 |
Pan troglodytes | retro_ptro_2477 |
Gorilla gorilla | retro_ggor_2469 |
Pongo abelii | retro_pabe_3000 |