RetrogeneDB ID: | retro_mmul_1624 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:99238499..99239026(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 87.57 % |
Parental protein coverage: | 87.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPK.KMSAYAF.VQ.CREEHKKKNPEVPVNFAEFSKKCSERWKTMS.KEKSKFDE.AK.DKV. | |
Retrocopy | MAKGDPKKPKSKMSAYAFYVQMCREEHKKKNPEVPVNFAEFSKKCSERWKTMSRKEKSKFDEIAKVDKVC |
Parental | YDREMKDYGPAKGGKKKKD-PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEK |
Y..EMKDYGPAKG.KKKKD..NA.KRPPS.FFLFCSE..PKIKSTNP.ISIGDVAKKLGEMWNNLNDSEK | |
Retrocopy | YYQEMKDYGPAKGAKKKKD<SNASKRPPSRFFLFCSELGPKIKSTNPTISIGDVAKKLGEMWNNLNDSEK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
QPYITKAAKLKEK.EKDVAD.KSKGKFDG.K.PA.VA | |
Retrocopy | QPYITKAAKLKEK*EKDVADCKSKGKFDGTKDPAIVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .08 RPM | 33 .70 RPM |