RetrogeneDB ID: | retro_ggor_1540 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:33487093..33487458(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.29 % |
Parental protein coverage: | 61.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGD.KKPKGKMSAYAFFVQ.C.EEHKKKNPEV.VNFAE.S.KCSER.KTMS.KEKSKFDEMAKA.KV. | |
Retrocopy | MAKGDTKKPKGKMSAYAFFVQMCGEEHKKKNPEVLVNFAEYSRKCSER*KTMSVKEKSKFDEMAKANKVH |
Parental | YDREMKDYGPAKGGKKKKDPNA-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDV |
YDREMKDYGPAKGGKKK.DPNA.PKR..SG.FLFCSEF.P.IKSTNPGISIGDV | |
Retrocopy | YDREMKDYGPAKGGKKK-DPNA<PKRLLSGSFLFCSEFCPEIKSTNPGISIGDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .03 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |