RetrogeneDB ID: | retro_rnor_2516 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:27943565..27944094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000050911 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSRNOG00000050910 | ||
Aliases: | None | ||
Description: | Hmgb3 protein; Protein Hmgb3; RCG56793 [Source:UniProtKB/TrEMBL;Acc:B0BN99] |
Percent Identity: | 72.53 % |
Parental protein coverage: | 89. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAKGDPKKPKGKMSAY-AFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKV |
MAK.DPKKPKGK.SA..AFFVQTC.EE.KK.NPEVPVNFAEFS.K.SERWKTMSSKEKS.FDEMA.A.KV | |
Retrocopy | MAKDDPKKPKGKVSAH>AFFVQTCGEECKKRNPEVPVNFAEFSEKSSERWKTMSSKEKSEFDEMAEAEKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPK-IKSANPGISI-GDVAKKLGEMWNNLSDS |
..D.EM...GPAKGG.KKKD..AP.RP..GF.L.CSE..P..IKS.NPG.SI....A.KLGE.WNNLSDS | |
Retrocopy | LCDPEMENQGPAKGG-KKKDSKAPERPQAGFLLSCSESAPR<IKSTNPGASI<SPIAIKLGELWNNLSDS |
Parental | EKQPYMTKAAKLKEKYEKDV-ADYKSKGKFDGAKGPAKVARK |
EKQPY.TK.A.L.E..EK...AD.KSKGKF.GAKGPAKVA.K | |
Retrocopy | EKQPYITKTATLRERHEKEA<ADCKSKGKFEGAKGPAKVAAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |