RetrogeneDB ID: | retro_ggor_618 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:130409427..130409799(-) | ||
Located in intron of: | ENSGGOG00000002386 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.19 % |
Parental protein coverage: | 63.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDP....GKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKK.SERWK.MSGKEKSKFDEMAK..KV. | |
Retrocopy | MAKGDP*N--GKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKRSERWKIMSGKEKSKFDEMAKVIKVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKL |
YDREMKDYGPAKGG.KKKDPNA.KRPPSGFFLFCSEF...IKSTNPG.SIGDVAKKL | |
Retrocopy | YDREMKDYGPAKGG-KKKDPNARKRPPSGFFLFCSEFCT*IKSTNPGFSIGDVAKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |