RetrogeneDB ID: | retro_mmul_514 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:95619935..95620457(-) | ||
Located in intron of: | ENSMMUG00000005070 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 67.96 % |
Parental protein coverage: | 88.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKP..K.S.Y.FF.QTCREEHKK.NPEV.V.FAEFS.KCSERWK.MSGKE....DEM.KADKV. | |
Retrocopy | MAKGDPKKPEEKVSVYVFFLQTCREEHKK-NPEVSVSFAEFSNKCSERWKIMSGKENPTCDEMTKADKVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV-AKKLG-EMWNNLNDSE |
Y...MKD..P.K.GK...D....KRPPSGFFL.CSEF.PKIKS.NPGI.I.....KK.G.EMW.NL..SE | |
Retrocopy | YAWKMKDCEPVK*GK---DLHVSKRPPSGFFLYCSEFHPKIKSINPGIFIREM>SKKTG>EMWDNLSVSE |
Parental | KQPYITKAAKLKEKYEKDVAD-YKSKGKFDGAKGPAKVARK |
KQP.ITKA.KL.EK.EK.VAD..KS..K..GAKGPAKV..K | |
Retrocopy | KQPCITKAVKLREKNEKGVAD>FKSNSK-SGAKGPAKVPCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .13 RPM | 3 .29 RPM |
SRP007412_heart | 0 .06 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .08 RPM | 3 .21 RPM |
SRP007412_testis | 0 .26 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_422 |
Gorilla gorilla | retro_ggor_414 |
Pongo abelii | retro_pabe_297 |