RetrogeneDB ID: | retro_ggor_2250 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:41392375..41392935(-) | ||
Located in intron of: | ENSGGOG00000010899 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000010918 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.42 % |
Parental protein coverage: | 94. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNP.VPVNFAEFSKKCSERWKTMS.KEKSKF.E.AKADKV. | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTMSKKEKSKFNELAKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSG-FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEK |
YD.E.KDYGPAKGG.KKKDPNAPKRPPS..FFLFCSEF.PK.KSTNPGI.IGDVAKKLGEMW.NLNDSEK | |
Retrocopy | YDQEIKDYGPAKGG-KKKDPNAPKRPPSD<FFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEE |
QPYIT..AKLKEKYEKDVA.YKSKGK.DGAKGPAKVA.KKVEEEDE.EE | |
Retrocopy | QPYITQVAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDEDEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .37 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1755 |
Pan troglodytes | retro_ptro_1211 |
Pongo abelii | retro_pabe_1505 |