RetrogeneDB ID: | retro_ggor_301 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:143482305..143482837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026447 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.44 % |
Parental protein coverage: | 89. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT-MSGKEKSKFDEMAKADKV |
MAKGDPKKPKGKMSAYAFFVQT.REEHKKKNP.VPVNF.EFSKKCS.RWKT.MSGK.KSKFDEMAKADKV | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVQTSREEHKKKNPAVPVNFVEFSKKCSDRWKT<MSGK*KSKFDEMAKADKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEK |
RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEF.PKIKSTNPGISIG.VAKKLGEMWNNLNDSEK | |
Retrocopy | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFHPKIKSTNPGISIGVVAKKLGEMWNNLNDSEK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVARK |
QPYITKAAKLKEKYEKDVADYKSKGKFDGA.KGPAKVA.K | |
Retrocopy | QPYITKAAKLKEKYEKDVADYKSKGKFDGA<KGPAKVAWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_248 |
Pan troglodytes | retro_ptro_213 |
Pongo abelii | retro_pabe_410 |