RetrogeneDB ID: | retro_rnor_954 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:29675143..29675516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSRNOG00000050910 | ||
Aliases: | None | ||
Description: | Hmgb3 protein; Protein Hmgb3; RCG56793 [Source:UniProtKB/TrEMBL;Acc:B0BN99] |
Percent Identity: | 73.02 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYM |
EMKDYGP.KG..KKKD.NAPKR..SGFFLFCS.F.PKIKS.N.GISIGDVAKKL.EMWNNLS.SEK..Y. | |
Retrocopy | EMKDYGPLKG-RKKKDLNAPKRTLSGFFLFCSKFCPKIKSTNCGISIGDVAKKLNEMWNNLSHSEKPAYI |
Parental | TKAAKLKEK-YEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEEEEE |
TK.AKL..K..EKD.A.YKS.GKFD.AKGPA.VA.KKVE.EEEE..E...E.EE.E | |
Retrocopy | TKSAKLRAK>VEKDAANYKSEGKFDDAKGPANVAQKKVETEEEEK*E*DKEDEEHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |