RetrogeneDB ID: | retro_ggor_414 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:95118908..95119446(-) | ||
Located in intron of: | ENSGGOG00000024347 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.13 % |
Parental protein coverage: | 91. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKP.GK.SAY.FFVQTCREEHK..NPEV.VNFAEFSKKCSERWKT.SGKE..K..EM.KADKV. | |
Retrocopy | MAKGDPKKPEGKVSAYSFFVQTCREEHKR-NPEVSVNFAEFSKKCSERWKTVSGKENPKCGEMTKADKVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ |
Y...M.D..P.K.GKKK.D....KR..S.FFL.CSEF.P.I.STNPGI.I.DVAKKL.E.W.NLN.SEKQ | |
Retrocopy | YAWKMQDCEPVK*GKKK-DLHVSKRDMSVFFLHCSEFHPTIQSTNPGIFIRDVAKKLCEVWDNLNVSEKQ |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPA-KVARKKVEE |
P.ITKA.KL.EKYEKDVAD.KS..K...AKGPA.KV..KKVEE | |
Retrocopy | PCITKAVKLREKYEKDVADFKSNSK-SSAKGPA>KVPWKKVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .16 RPM | 6 .07 RPM |
SRP007412_heart | 0 .16 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .12 RPM | 12 .80 RPM |
SRP007412_liver | 0 .08 RPM | 21 .34 RPM |
SRP007412_testis | 0 .21 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_422 |
Pongo abelii | retro_pabe_297 |
Macaca mulatta | retro_mmul_514 |