Parental gene:

HMGB3, ENSMMUG00000004633

Aliases:None
Description:high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:X:149066724..149072246(+)


>ENSMMUG00000004633
ATGGCTAAAGGTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACA
TAAGAAGAAAAACCCAGAGGTCCCTGTTAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCG
GGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCA
GCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATT
CCGTCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATT
TAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTAT
AAGTCAAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGATGAAGAAGA
GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .47 RPM
SRP007412_brain 8 .85 RPM
SRP007412_cerebellum 3 .29 RPM
SRP007412_heart 10 .07 RPM
SRP007412_kidney 10 .45 RPM
SRP007412_liver 3 .21 RPM
SRP007412_testis 33 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_many2many 2 retrogenes
retro_btau_190, retro_btau_38,
Canis familiaris ENSCAFG00000028715 possible_ortholog 1 retrogene
retro_cfam_1537,
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2many 2 retrogenes
retro_chof_1891, retro_chof_2010,
Callithrix jacchus ENSCJAG00000003936 ortholog_one2many 9 retrogenes
retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Dipodomys ordii ENSDORG00000010826 ortholog_one2one 4 retrogenes
retro_dord_214, retro_dord_337, retro_dord_454, retro_dord_609,
Equus caballus ENSECAG00000020596 possible_ortholog 1 retrogene
retro_ecab_890,
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Felis catus ENSFCAG00000024624 possible_ortholog 4 retrogenes
retro_fcat_1480, retro_fcat_1504, retro_fcat_265, retro_fcat_865,
Homo sapiens ENSG00000029993 ortholog_one2one 8 retrogenes
retro_hsap_1461, retro_hsap_1873, retro_hsap_2621, retro_hsap_3064, retro_hsap_3683, retro_hsap_4251, retro_hsap_4904, retro_hsap_627,
Gorilla gorilla ENSGGOG00000027164 ortholog_one2one 16 retrogenes
retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Loxodonta africana ENSLAFG00000025877 possible_ortholog 1 retrogene
retro_lafr_893,
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta ENSMMUG00000023399 other_paralog 3 retrogenes
retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica ENSMODG00000005735 ortholog_one2many 7 retrogenes
retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo ENSMPUG00000011606 ortholog_many2many 2 retrogenes
retro_mputfur_138, retro_mputfur_26,
Mus musculus ENSMUSG00000015217 ortholog_one2many 1 retrogene
retro_mmus_273,
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii ENSOGAG00000001773 ortholog_one2many 19 retrogenes
retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Procavia capensis ENSPCAG00000001945 possible_ortholog 1 retrogene
retro_pcap_328,
Pongo abelii ENSPPYG00000020818 ortholog_one2one 22 retrogenes
retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pan troglodytes ENSPTRG00000022371 ortholog_one2one 22 retrogenes
retro_ptro_1115, retro_ptro_1211, retro_ptro_1276, retro_ptro_1429, retro_ptro_1432, retro_ptro_1561, retro_ptro_174, retro_ptro_1766, retro_ptro_2066, retro_ptro_213, retro_ptro_2218, retro_ptro_2296, retro_ptro_2477, retro_ptro_2497, retro_ptro_2608, retro_ptro_2891, retro_ptro_2944, retro_ptro_3154, retro_ptro_3271, retro_ptro_456, retro_ptro_522, retro_ptro_629,
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2many 1 retrogene
retro_pvam_356,
Rattus norvegicus ENSRNOG00000011096 ortholog_one2many 4 retrogenes
retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus ENSRNOG00000050910 ortholog_one2many 5 retrogenes
retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2many 2 retrogenes
retro_shar_139, retro_shar_316,
Sus scrofa ENSSSCG00000012745 ortholog_many2many 3 retrogenes
retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus ENSSTOG00000023908 ortholog_one2many 6 retrogenes
retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,
Tupaia belangeri ENSTBEG00000003068 ortholog_one2many 18 retrogenes
retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus ENSTTRG00000000205 ortholog_one2many 2 retrogenes
retro_ttru_1187, retro_ttru_372,
Vicugna pacos ENSVPAG00000000096 ortholog_one2many 2 retrogenes
retro_vpac_245, retro_vpac_434,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_267 82.93 61.19
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2. retro_mmul_399 82.61 68.66
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3. retro_mmul_514 67.96 88.56
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4. retro_mmul_597 88.00 61.19
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5. retro_mmul_1003 77.65 88.06
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6. retro_mmul_1115 68.99 77.61
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7. retro_mmul_1143 88.82 75.62
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8. retro_mmul_1303 67.42 87.56
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9. retro_mmul_1341 83.33 89.55
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10. retro_mmul_1482 70.99 63.18
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11. retro_mmul_1568 69.63 92.54
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12. retro_mmul_1624 87.57 87.56
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13. retro_mmul_1799 72.07 87.56
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14. retro_mmul_1957 84.44 66.17
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15. retro_mmul_2106 72.58 61.19
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16. retro_mmul_2425 80.22 88.56
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17. retro_mmul_2451 94.32 87.56
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18. retro_mmul_2469 78.09 87.56
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19. retro_mmul_2484 94.44 89.55
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20. retro_mmul_2526 81.46 88.56
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Download FASTA sequences of all ENSMMUG00000004633 retrocopies