RetrogeneDB - Parental gene ENSMMUG00000004633 details

Parental gene:	HMGB3, ENSMMUG00000004633
Aliases:	None
Description:	high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	X:149066724..149072246(+)

                            
>ENSMMUG00000004633
ATGGCTAAAGGTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACA

TAAGAAGAAAAACCCAGAGGTCCCTGTTAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCG

GGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCA

GCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATT

CCGTCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATT

TAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTAT

AAGTCAAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGATGAAGAAGA

GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAATAA

Library	Parental gene expression (RPM)
SRP007412_brain	8 .85 RPM
SRP007412_brain_prefrontal_cortex	5 .47 RPM
SRP007412_cerebellum	3 .29 RPM
SRP007412_heart	10 .07 RPM
SRP007412_kidney	10 .45 RPM
SRP007412_liver	3 .21 RPM
SRP007412_testis	33 .70 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000005150	ortholog_many2many	2 retrogenes	retro_btau_190, retro_btau_38,
Canis familiaris	ENSCAFG00000028715	possible_ortholog	1 retrogene	retro_cfam_1537,
Choloepus hoffmanni	ENSCHOG00000005005	ortholog_one2many	2 retrogenes	retro_chof_1891, retro_chof_2010,
Callithrix jacchus	ENSCJAG00000003936	ortholog_one2many	9 retrogenes	retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Dipodomys ordii	ENSDORG00000010826	ortholog_one2one	4 retrogenes	retro_dord_214, retro_dord_337, retro_dord_454, retro_dord_609,
Equus caballus	ENSECAG00000020596	possible_ortholog	1 retrogene	retro_ecab_890,
Echinops telfairi	ENSETEG00000015689	possible_ortholog	4 retrogenes	retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Felis catus	ENSFCAG00000024624	possible_ortholog	4 retrogenes	retro_fcat_1480, retro_fcat_1504, retro_fcat_265, retro_fcat_865,
Homo sapiens	ENSG00000029993	ortholog_one2one	8 retrogenes	retro_hsap_1461, retro_hsap_1873, retro_hsap_2621, retro_hsap_3064, retro_hsap_3683, retro_hsap_4251, retro_hsap_4904, retro_hsap_627,
Gorilla gorilla	ENSGGOG00000027164	ortholog_one2one	16 retrogenes	retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Loxodonta africana	ENSLAFG00000025877	possible_ortholog	1 retrogene	retro_lafr_893,
Myotis lucifugus	ENSMLUG00000010926	possible_ortholog	4 retrogenes	retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta	ENSMMUG00000023399	other_paralog	3 retrogenes	retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica	ENSMODG00000005735	ortholog_one2many	7 retrogenes	retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo	ENSMPUG00000011606	ortholog_many2many	2 retrogenes	retro_mputfur_138, retro_mputfur_26,
Mus musculus	ENSMUSG00000015217	ortholog_one2many	1 retrogene	retro_mmus_273,
Oryctolagus cuniculus	ENSOCUG00000005986	possible_ortholog	7 retrogenes	retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii	ENSOGAG00000001773	ortholog_one2many	19 retrogenes	retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Procavia capensis	ENSPCAG00000001945	possible_ortholog	1 retrogene	retro_pcap_328,
Pongo abelii	ENSPPYG00000020818	ortholog_one2one	22 retrogenes	retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pan troglodytes	ENSPTRG00000022371	ortholog_one2one	22 retrogenes	retro_ptro_1115, retro_ptro_1211, retro_ptro_1276, retro_ptro_1429, retro_ptro_1432, retro_ptro_1561, retro_ptro_174, retro_ptro_1766, retro_ptro_2066, retro_ptro_213, retro_ptro_2218, retro_ptro_2296, retro_ptro_2477, retro_ptro_2497, retro_ptro_2608, retro_ptro_2891, retro_ptro_2944, retro_ptro_3154, retro_ptro_3271, retro_ptro_456, retro_ptro_522, retro_ptro_629,
Pteropus vampyrus	ENSPVAG00000000219	ortholog_one2many	1 retrogene	retro_pvam_356,
Rattus norvegicus	ENSRNOG00000011096	ortholog_one2many	4 retrogenes	retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus	ENSRNOG00000050910	ortholog_one2many	5 retrogenes	retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii	ENSSHAG00000002916	ortholog_one2many	2 retrogenes	retro_shar_139, retro_shar_316,
Sus scrofa	ENSSSCG00000012745	ortholog_many2many	3 retrogenes	retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus	ENSSTOG00000023908	ortholog_one2many	6 retrogenes	retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,
Tupaia belangeri	ENSTBEG00000003068	ortholog_one2many	18 retrogenes	retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus	ENSTTRG00000000205	ortholog_one2many	2 retrogenes	retro_ttru_1187, retro_ttru_372,
Vicugna pacos	ENSVPAG00000000096	ortholog_one2many	2 retrogenes	retro_vpac_245, retro_vpac_434,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_267	82.93	61.19	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmul_399	82.61	68.66	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmul_514	67.96	88.56	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmul_597	88.00	61.19	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmul_1003	77.65	88.06	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmul_1115	68.99	77.61	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmul_1143	88.82	75.62	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_mmul_1303	67.42	87.56	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_mmul_1341	83.33	89.55	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_mmul_1482	70.99	63.18	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_mmul_1568	69.63	92.54	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_mmul_1624	87.57	87.56	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_mmul_1799	72.07	87.56	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_mmul_1957	84.44	66.17	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_mmul_2106	72.58	61.19	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_mmul_2425	80.22	88.56	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_mmul_2451	94.32	87.56	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_mmul_2469	78.09	87.56	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_mmul_2484	94.44	89.55	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_mmul_2526	81.46	88.56	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000004633 retrocopies

Parental gene:

HMGB3, ENSMMUG00000004633