RetrogeneDB ID: | retro_ggor_1538 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:32220436..32220787(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.33 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKK |
.SKFD.MAKADKV..DREMKDYGPAKGGK...DPNAPKRP.SGFFLFCSEF.PKIKSTNPGISIGDVAKK | |
Retrocopy | ESKFD*MAKADKVHCDREMKDYGPAKGGKN--DPNAPKRPLSGFFLFCSEFCPKIKSTNPGISIGDVAKK |
Parental | LGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
LGEMWNNLNDSEKQPY.TK.AKLK.KYEKDVADYKSKGK.DG.KGPAKVA | |
Retrocopy | LGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTKGPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .03 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2473 |
Pan troglodytes | retro_ptro_1429 |
Pongo abelii | retro_pabe_1823 |
Macaca mulatta | retro_mmul_267 |