RetrogeneDB ID: | retro_mmul_1115 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:85764406..85764866(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 68.99 % |
Parental protein coverage: | 77.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD-YGPAKGGKKKKDP |
TC.E....KNPEVPVNFA.FSK.CSE...TMS..EK.K.DEMA..DKV....EMKD....AKGGKK..DP | |
Retrocopy | TCAEKNITKNPEVPVNFAKFSKQCSEK*QTMSRREKFKVDEMANVDKVLHVWEMKD<LRSAKGGKK--DP |
Parental | NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKL-GEMWNNLNDSEKQPYITKAAKLKEKYEKDVAD |
N..KRPPS.FF.F.SE..PKI.STNP.ISI.DVAKKL.GEMWNNLN..E.QP.I.KAAKL.EK.EKDVAD | |
Retrocopy | NSLKRPPSVFFQFFSEVYPKIRSTNPVISIRDVAKKL<GEMWNNLNNGEMQPCISKAAKLREKHEKDVAD |
Parental | YKSKGKFDGAKGPAKVAR |
.KSKGKFD.AK.P.KVA. | |
Retrocopy | CKSKGKFDDAKNPTKVAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .11 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_909 |
Pan troglodytes | retro_ptro_629 |
Pongo abelii | retro_pabe_784 |