Parental gene:

Hmgb3, ENSRNOG00000011096

Aliases:Hmgb3, RGD1564407
Description:high mobility group box 3 [Source:RefSeq peptide;Acc:NP_001166812]
Organism:Rat (Rattus norvegicus)
Coordinates:14:51617773..51622052(-)


>ENSRNOG00000011096
ATGGCTAAAGGTGATCCCAAGAAACCAAAGGGCAAGATGTCCGCCTATGCCTTCTTCGTGCAGACGTGCAGGGAAGAACA
CAAGAAGAAAAACCCAGAGGTTCCAGTCAACTTTGCTGAGTTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCTA
GCAAAGAGAAATCAAAGTTTGACGAAATGGCCAAGGCGGATAAGGTACGCTACGATCGTGAAATGAAAGATTATGGGCCA
GCTAAAGGAGGCAAAAAGAAGAAGGACCCGAATGCCCCCAAAAGACCTCCGTCTGGATTTTTCTTGTTCTGCTCTGAATT
CCGCCCGAAGATCAAATCTGCAAACCCTGGCATCTCTATTGGAGATGTGGCCAAAAAGCTGGGTGAGATGTGGAATAACT
TAAGTGACAGTGAAAAGCAGCCTTACATGACCAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTAT
AAGTCTAAAGGGAAGTTTGATGGTGCCAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAAGAGGAGGAGGAGGA
GGAAGAAGAAGAGGAGGAGGAGGAAGAGGAAGAAGATGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .29 RPM
SRP017611_kidney 0 .42 RPM
SRP017611_liver 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_many2many 2 retrogenes
retro_btau_190, retro_btau_38,
Canis familiaris ENSCAFG00000028715 possible_ortholog 1 retrogene
retro_cfam_1537,
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2many 2 retrogenes
retro_chof_1891, retro_chof_2010,
Callithrix jacchus ENSCJAG00000003936 ortholog_many2many 9 retrogenes
retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Dipodomys ordii ENSDORG00000010826 ortholog_one2many 4 retrogenes
retro_dord_214, retro_dord_337, retro_dord_454, retro_dord_609,
Equus caballus ENSECAG00000020596 possible_ortholog 1 retrogene
retro_ecab_890,
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Felis catus ENSFCAG00000024624 possible_ortholog 4 retrogenes
retro_fcat_1480, retro_fcat_1504, retro_fcat_265, retro_fcat_865,
Homo sapiens ENSG00000029993 ortholog_one2many 8 retrogenes
retro_hsap_1461, retro_hsap_1873, retro_hsap_2621, retro_hsap_3064, retro_hsap_3683, retro_hsap_4251, retro_hsap_4904, retro_hsap_627,
Gorilla gorilla ENSGGOG00000027164 ortholog_one2many 16 retrogenes
retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Loxodonta africana ENSLAFG00000025877 possible_ortholog 1 retrogene
retro_lafr_893,
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta ENSMMUG00000004633 ortholog_one2many 20 retrogenes
retro_mmul_1003, retro_mmul_1115, retro_mmul_1143, retro_mmul_1303, retro_mmul_1341, retro_mmul_1482, retro_mmul_1568, retro_mmul_1624, retro_mmul_1799, retro_mmul_1957, retro_mmul_2106, retro_mmul_2425, retro_mmul_2451, retro_mmul_2469, retro_mmul_2484, retro_mmul_2526, retro_mmul_267, retro_mmul_399, retro_mmul_514, retro_mmul_597,
Monodelphis domestica ENSMODG00000005735 ortholog_one2many 7 retrogenes
retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo ENSMPUG00000011606 ortholog_many2many 2 retrogenes
retro_mputfur_138, retro_mputfur_26,
Mus musculus ENSMUSG00000015217 ortholog_many2many 1 retrogene
retro_mmus_273,
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii ENSOGAG00000001773 ortholog_many2many 19 retrogenes
retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Procavia capensis ENSPCAG00000001945 possible_ortholog 1 retrogene
retro_pcap_328,
Pongo abelii ENSPPYG00000020818 ortholog_one2many 22 retrogenes
retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pan troglodytes ENSPTRG00000022371 ortholog_one2many 22 retrogenes
retro_ptro_1115, retro_ptro_1211, retro_ptro_1276, retro_ptro_1429, retro_ptro_1432, retro_ptro_1561, retro_ptro_174, retro_ptro_1766, retro_ptro_2066, retro_ptro_213, retro_ptro_2218, retro_ptro_2296, retro_ptro_2477, retro_ptro_2497, retro_ptro_2608, retro_ptro_2891, retro_ptro_2944, retro_ptro_3154, retro_ptro_3271, retro_ptro_456, retro_ptro_522, retro_ptro_629,
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2many 1 retrogene
retro_pvam_356,
Rattus norvegicus ENSRNOG00000013167 within_species_paralog 2 retrogenes
retro_rnor_173, retro_rnor_54,
Rattus norvegicus ENSRNOG00000029813 other_paralog 1 retrogene
retro_rnor_421,
Rattus norvegicus ENSRNOG00000050910 within_species_paralog 5 retrogenes
retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2many 2 retrogenes
retro_shar_139, retro_shar_316,
Sus scrofa ENSSSCG00000012745 ortholog_many2many 3 retrogenes
retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus ENSSTOG00000023908 ortholog_many2many 6 retrogenes
retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,
Tupaia belangeri ENSTBEG00000003068 ortholog_one2many 18 retrogenes
retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus ENSTTRG00000000205 ortholog_one2many 2 retrogenes
retro_ttru_1187, retro_ttru_372,
Vicugna pacos ENSVPAG00000000096 ortholog_one2many 2 retrogenes
retro_vpac_245, retro_vpac_434,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1049 95.51 89.00
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2. retro_rnor_2303 77.27 65.00
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3. retro_rnor_2359 77.50 58.50
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4. retro_rnor_2363 77.50 58.50
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Download FASTA sequences of all ENSRNOG00000011096 retrocopies