RetrogeneDB ID: | retro_rnor_1956 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:24930159..24930737(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSRNOG00000050910 | ||
Aliases: | None | ||
Description: | Hmgb3 protein; Protein Hmgb3; RCG56793 [Source:UniProtKB/TrEMBL;Acc:B0BN99] |
Percent Identity: | 79.9 % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KGDPKKPKGKMSA-YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRY |
K..PKKPKGKMSA.YAFF.QT.RE..KK..PEVPVNFAEFSKKC.ER.KTMSSKEKSK.DE.AK.DKVRY | |
Retrocopy | KATPKKPKGKMSA<YAFFMQTFREVRKKRHPEVPVNFAEFSKKCFERLKTMSSKEKSKLDEKAKMDKVRY |
Parental | DREMKDYGPAKGGKKKKDPNAPKRPPSG-FFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQ |
D.EMKDYGP.KG.K.KKDPNAP.......FFLFCSEF.PKI.S.NPGISIGDVAKKLGEMWNNLSDSEKQ | |
Retrocopy | DPEMKDYGPTKGSKRKKDPNAPQKTSVKIFFLFCSEFHPKIESTNPGISIGDVAKKLGEMWNNLSDSEKQ |
Parental | PYMTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEE |
PY.TKAAKL..KYEKD.AD.KSKGKFDGAKG.AKVAR.KVEEEE.E.E..EEEE | |
Retrocopy | PYVTKAAKLRAKYEKDAADSKSKGKFDGAKGAAKVAR*KVEEEENEDEKDEEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |