RetrogeneDB ID: | retro_rnor_720 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:100809820..100810251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSRNOG00000050910 | ||
Aliases: | None | ||
Description: | Hmgb3 protein; Protein Hmgb3; RCG56793 [Source:UniProtKB/TrEMBL;Acc:B0BN99] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 71. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT-MSSKEKSK-FDEMAKADKV |
AKGDPKKPKGKMS.YAFF.QTCREE.KKKNPE.PVNFAEFSKKCSE.WKT.MSSKEKS...DE.AKADKV | |
Retrocopy | AKGDPKKPKGKMSPYAFFTQTCREEDKKKNPEIPVNFAEFSKKCSEMWKT>MSSKEKSS*SDEVAKADKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFR-PKIKSANPGISIGDVAKKLGEMWNNLSDSE |
.YDRE.KDYGPAKGGKKKKDPNAP.RPPSGFF.FCSEFR.PKIKS.NPGI..GDVAKKLGEMWNNLS.SE | |
Retrocopy | HYDREVKDYGPAKGGKKKKDPNAPQRPPSGFFSFCSEFR>PKIKSTNPGIFLGDVAKKLGEMWNNLSHSE |
Parental | KQPYM |
.QP.. | |
Retrocopy | RQPHI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |