RetrogeneDB ID: | retro_mmul_1482 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:168686533..168686916(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000016330 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 70.99 % |
Parental protein coverage: | 63.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | DREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK-KL-GEMWN-NLNDSE |
D.EMKDY.PAKG..KKK..NA.K.PPSGFFLFCS.F.PKIKST.PGIS...V.K.KL.GEMWN....DSE | |
Retrocopy | DWEMKDYEPAKGQDKKKVLNALKSPPSGFFLFCSAFYPKIKSTKPGISVEVVTK<KLLGEMWN<CVSDSE |
Parental | KQPYITKAAKLKEKYEKDVADYKSKGKFDGAKG-PAKVARKKVEEEDEEEEEEEEEEEEEE |
KQ..ITKA.KLKEKYEKDVAD.KSKGKFDG.KG.P..VA.KKVE..D..EEEEE...EE.E | |
Retrocopy | KQSCITKAVKLKEKYEKDVADFKSKGKFDGTKG>PLNVAWKKVEDKDDKEEEEEMSGEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2621 |
Pan troglodytes | retro_ptro_1766 |
Gorilla gorilla | retro_ggor_1834 |
Pongo abelii | retro_pabe_2339 |