RetrogeneDB ID: | retro_mmul_2106 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:119861331..119861696(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 72.58 % |
Parental protein coverage: | 61.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.K.D..K.KGKMSAYAFF.Q..RE..KKKNPE.P..FA.FSKK.SERWK.MSGKEKSKFDE.AKA.KV. | |
Retrocopy | MTKDDCNKLKGKMSAYAFFAQK*REACKKKNPEDPFDFADFSKK*SERWKRMSGKEKSKFDEIAKANKVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSG-FFLFCSEFRPKIKSTNPGISIGDV |
YD.EMKDY.PAK.G.KKKD..AP.RPPSG..F.FCSEF.PKIKSTN...SIG.V | |
Retrocopy | YDWEMKDYRPAKRG-KKKDLYAP*RPPSG<YFPFCSEFCPKIKSTNLCVSIGEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2296 |