RetrogeneDB ID: | retro_mmul_2451 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:64228281..64228809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 94.32 % |
Parental protein coverage: | 87.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGD.KKPKGKMSAYAFFVQ.CREEHKKKNPEVPVNFAE.SKKCSER.K.MSGKEKSKFD.MAKADKVR | |
Retrocopy | MAKGDLKKPKGKMSAYAFFVQMCREEHKKKNPEVPVNFAEVSKKCSER*KMMSGKEKSKFDKMAKADKVR |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ |
YDREMKDYGPAKGGKKKKDP.APKRPPSGFFLFCSEFRPKIK.TNPGISIGDVAKKLGEMW.NLNDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPDAPKRPPSGFFLFCSEFRPKIKCTNPGISIGDVAKKLGEMWKNLNDSEKQ |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
PYITKAAKLKEKYEKDVAD.KSKGKFDGAKGPAKVA | |
Retrocopy | PYITKAAKLKEKYEKDVADFKSKGKFDGAKGPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .84 RPM | 3 .29 RPM |
SRP007412_heart | 0 .41 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .12 RPM | 10 .45 RPM |
SRP007412_liver | 0 .04 RPM | 3 .21 RPM |
SRP007412_testis | 0 .38 RPM | 33 .70 RPM |