RetrogeneDB ID: | retro_rnor_2363 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:60440293..60440643(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048271 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb3 | ||
Ensembl ID: | ENSRNOG00000011096 | ||
Aliases: | Hmgb3, RGD1564407 | ||
Description: | high mobility group box 3 [Source:RefSeq peptide;Acc:NP_001166812] |
Percent Identity: | 77.5 % |
Parental protein coverage: | 58.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EMAKADKVRYDREMKDYGPAKGGKKKKDPNA-PKRPPSGFFLFCSEFRPKIKSANPGISIGDVAK-KLGE |
.MA.ADKVRYDREMK.YGPAKGGKKKKDPNA..KRP..GF.LFCSE..P.IKS.NPG.SIGDVAK.KLGE | |
Retrocopy | QMANADKVRYDREMKGYGPAKGGKKKKDPNA>AKRPLFGFLLFCSELLPEIKSTNPGFSIGDVAK<KLGE |
Parental | MWNNLSDSEKQPYMTKAAKLKEKYEKDVADYK-SKGKFDGAKGPAKVARK |
.WNNLSDSEKQP..TKAA.L.EKYEKD.AD.K...GKF.G.KGPAKVA.K | |
Retrocopy | TWNNLSDSEKQPNITKAATLREKYEKDAADCK<AYGKFEGIKGPAKVAWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .42 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |