RetrogeneDB ID: | retro_ggor_549 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:124244291..124244656(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.55 % |
Parental protein coverage: | 61. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAF-FVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
MA..DP.KPK.KMSA.AF.FV.TCREEHKKKNPEVPVNFAEFSKKCSE.WKTM.GKEKSKFDEMAK.DKV | |
Retrocopy | MAEDDPTKPKSKMSASAF<FV*TCREEHKKKNPEVPVNFAEFSKKCSEGWKTMYGKEKSKFDEMAKVDKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGD |
.YD.E.KDYGPAKGG.KKKDPNAPK.PPSGFFLF.SEFR.KIKST.P.ISIGD | |
Retrocopy | HYDQEKKDYGPAKGGRKKKDPNAPKMPPSGFFLFYSEFRSKIKSTKPSISIGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .04 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_627 |
Pan troglodytes | retro_ptro_456 |
Pongo abelii | retro_pabe_560 |
Macaca mulatta | retro_mmul_2425 |