RetrogeneDB ID: | retro_ggor_1371 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:12667450..12667983(+) | ||
Located in intron of: | ENSGGOG00000005641 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.33 % |
Parental protein coverage: | 89.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAF-FVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
MAKGDPKKPKGKMSAYAF.FVQTCREEHKKK.P.V.VNFAEFSKKCSERWKTMSGKEKSKFDEMAK.DKV | |
Retrocopy | MAKGDPKKPKGKMSAYAF<FVQTCREEHKKKSPAVSVNFAEFSKKCSERWKTMSGKEKSKFDEMAKVDKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEK |
.Y..EMKDYGPAKGGKKK.DPNAPK.PPSGFFL.CSEF.PKIK..NPGIS.GDVAKKLGEMWNNLNDSEK | |
Retrocopy | YYHWEMKDYGPAKGGKKK-DPNAPKKPPSGFFLLCSEFHPKIKFINPGISTGDVAKKLGEMWNNLNDSEK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKK |
QPY.TKAAKLKEKYEKDV.DYK.KGKFDG.KG.AKVA.KK | |
Retrocopy | QPYTTKAAKLKEKYEKDVSDYKLKGKFDGEKGAAKVAQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .04 RPM | 6 .07 RPM |
SRP007412_heart | 0 .06 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .04 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1873 |
Pan troglodytes | retro_ptro_1276 |
Pongo abelii | retro_pabe_1580 |