Parental gene:

RPS18, ENSCJAG00000021650

Aliases:None
Description:ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:34076697..34081500(+)


>ENSCJAG00000021650
ATGTCTCTAGTGATCCCTGAAAAGTTCCAGCATATTTTGCGAGTACTCAACACCAACATCGATGGGCGGCGGAAAATAGC
CTTTGCCATCACTGCCATTAAGGGTGTGGGCCGAAGATACGCTCATGTGGTGTTGAGGAAAGCAGACATTGACCTCACCA
AGAGGGCAGGAGAACTCACTGAGGATGAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCAATATAAGATCCCA
GACTGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATATAGCCAGGTCCTAGCCAATGGTCTGGACAACAAGCT
CCGTGAAGACCTGGAGCGACTGAAGAAGATTCGGGCCCATAGAGGGCTTCGCCACTTCTGGGGCCTTCGTGTCCGAGGCC
AGCACACCAAGACCACTGGCCGCCGTGGCCGCACCGTGGGTGTATCCAAGAAGAAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 284 .83 RPM
SRP051959_skeletal_muscle 240 .81 RPM
SRP051959_lymph_node 463 .34 RPM
SRP051959_lung 204 .16 RPM
SRP051959_liver 335 .65 RPM
SRP051959_kidney 183 .90 RPM
SRP051959_heart 143 .92 RPM
SRP051959_colon 222 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002648 ortholog_one2one 2 retrogenes
retro_btau_1052, retro_btau_614,
Callithrix jacchus ENSCJAG00000010356 within_species_paralog 1 retrogene
retro_cjac_3061,
Dasypus novemcinctus ENSDNOG00000012084 ortholog_one2one 13 retrogenes
retro_dnov_1295, retro_dnov_1398, retro_dnov_1448, retro_dnov_1675, retro_dnov_1770, retro_dnov_2008, retro_dnov_2115, retro_dnov_2223, retro_dnov_2288, retro_dnov_327, retro_dnov_363, retro_dnov_384, retro_dnov_399,
Erinaceus europaeus ENSEEUG00000010297 ortholog_one2one 8 retrogenes
retro_eeur_201, retro_eeur_261, retro_eeur_380, retro_eeur_460, retro_eeur_473, retro_eeur_498, retro_eeur_667, retro_eeur_689,
Homo sapiens ENSG00000231500 ortholog_one2one 2 retrogenes
retro_hsap_1806, retro_hsap_1974,
Gorilla gorilla ENSGGOG00000006571 ortholog_one2one 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Macropus eugenii ENSMEUG00000016770 ortholog_one2one 11 retrogenes
retro_meug_1296, retro_meug_1737, retro_meug_1807, retro_meug_1946, retro_meug_212, retro_meug_310, retro_meug_344, retro_meug_387, retro_meug_566, retro_meug_625, retro_meug_627,
Myotis lucifugus ENSMLUG00000007360 possible_ortholog 2 retrogenes
retro_mluc_181, retro_mluc_932,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Monodelphis domestica ENSMODG00000014210 possible_ortholog 4 retrogenes
retro_mdom_1041, retro_mdom_1286, retro_mdom_1514, retro_mdom_642,
Oryctolagus cuniculus ENSOCUG00000010546 possible_ortholog 1 retrogene
retro_ocun_31,
Otolemur garnettii ENSOGAG00000006225 ortholog_one2one 7 retrogenes
retro_ogar_1498, retro_ogar_1832, retro_ogar_2372, retro_ogar_472, retro_ogar_608, retro_ogar_709, retro_ogar_905,
Pongo abelii ENSPPYG00000025953 ortholog_one2one 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 ortholog_one2one 1 retrogene
retro_ptro_121,
Pteropus vampyrus ENSPVAG00000001902 ortholog_one2one 6 retrogenes
retro_pvam_295, retro_pvam_556, retro_pvam_691, retro_pvam_708, retro_pvam_829, retro_pvam_875,
Rattus norvegicus ENSRNOG00000028505 possible_ortholog 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 possible_ortholog 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,
Sus scrofa ENSSSCG00000001502 ortholog_one2one 5 retrogenes
retro_sscr_112, retro_sscr_156, retro_sscr_157, retro_sscr_2, retro_sscr_831,
Tupaia belangeri ENSTBEG00000012708 ortholog_one2one 40 retrogenes
retro_tbel_1070, retro_tbel_1739, retro_tbel_1745, retro_tbel_1806, retro_tbel_1818, retro_tbel_1827, retro_tbel_1855, retro_tbel_205, retro_tbel_2087, retro_tbel_211, retro_tbel_2299, retro_tbel_2309, retro_tbel_2312, retro_tbel_234, retro_tbel_2364, retro_tbel_2424, retro_tbel_2473, retro_tbel_250, retro_tbel_2682, retro_tbel_2768, retro_tbel_295, retro_tbel_3189, retro_tbel_3317, retro_tbel_3383, retro_tbel_3625, retro_tbel_363, retro_tbel_3686, retro_tbel_3731, retro_tbel_3870, retro_tbel_4100, retro_tbel_4215, retro_tbel_4365, retro_tbel_45, retro_tbel_4562, retro_tbel_4578, retro_tbel_462, retro_tbel_57, retro_tbel_578, retro_tbel_856, retro_tbel_941,
Tursiops truncatus ENSTTRG00000004302 ortholog_one2one 3 retrogenes
retro_ttru_1012, retro_ttru_1553, retro_ttru_837,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_22 96.05 100.00
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2. retro_cjac_245 92.76 100.00
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3. retro_cjac_2529 89.47 100.00
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4. retro_cjac_2893 86.93 100.00
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5. retro_cjac_2955 82.79 78.95
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Download FASTA sequences of all ENSCJAG00000021650 retrocopies