RetrogeneDB ID: | retro_sscr_157 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:64304473..64304797(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSSCG00000001502 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_213940] |
Percent Identity: | 77.98 % |
Parental protein coverage: | 71.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLER |
VLRKAD..LTK.AGELTEDE...VITIMQNP.QYK.PDWFLNRQKD.KDGK.SQVLAN.LDNK..EDLE. | |
Retrocopy | VLRKADLNLTKKAGELTEDEGGCVITIMQNPHQYKVPDWFLNRQKDMKDGKDSQVLANDLDNKRHEDLEP |
Parental | LKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK |
L..I.A.RGLRHFWGL..RGQH..TTGRRGRTVG.SK.K | |
Retrocopy | L-*IWAQRGLRHFWGLCFRGQHAVTTGRRGRTVGLSKMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 615 .61 RPM |
SRP014902_testis | 0 .00 RPM | 1480 .24 RPM |
SRP018288_heart | 0 .00 RPM | 293 .03 RPM |
SRP018288_kidney | 0 .00 RPM | 354 .32 RPM |
SRP018288_liver | 0 .00 RPM | 346 .68 RPM |
SRP018288_lung | 0 .00 RPM | 340 .61 RPM |
SRP018856_adipose | 0 .00 RPM | 1001 .25 RPM |
SRP035408_brain | 0 .00 RPM | 436 .67 RPM |
SRP035408_liver | 0 .00 RPM | 396 .57 RPM |