RetrogeneDB ID: | retro_tbel_3189 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_133514:296..752(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 85.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHILRV.NTNIDGR.K.AFAITAIKGVGRRYAHV.LRKAD.DL.K.AGELTE.EVERV.T. | |
Retrocopy | MSLVIPEKFQHILRVFNTNIDGRQKAAFAITAIKGVGRRYAHVMLRKADTDLAKGAGELTEEEVERVTTT |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNPRQ.KIPDWFL.RQ.DVKD..YS.VLAN.LDNKL.EDLERLKKIRAHRGL.HFWGLRVRGQHTKTTG | |
Retrocopy | MQNPRQDKIPDWFLHRQIDVKDVNYSHVLANSLDNKLHEDLERLKKIRAHRGLHHFWGLRVRGQHTKTTG |
Parental | RRGRTVGVSKKK |
.RGRT..VSKKK | |
Retrocopy | HRGRTKDVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |