RetrogeneDB ID: | retro_tbel_4215 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_72023:1503..1959(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000013319 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 82.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHIL.VLNTNIDG...IA.A.TAIKG.G..YAHVVLRKAD.DLTKRAGEL.EDEVE.V.TI | |
Retrocopy | MSLVIPEKFQHIL*VLNTNIDGQWEIALAVTAIKGMG*IYAHVVLRKADTDLTKRAGELPEDEVEGVVTI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNP.QYKIPDWFLNRQKDVKDGKY.QVLAN.LDNKL.EDLE.LKKIR.HRGL.H.WGLRV.GQHTKTTG | |
Retrocopy | MQNPHQYKIPDWFLNRQKDVKDGKYRQVLANSLDNKLHEDLESLKKIRVHRGLHHLWGLRVQGQHTKTTG |
Parental | RRGRTVGVSKKK |
..G.T..VSKKK | |
Retrocopy | LCGCTMSVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |