RetrogeneDB ID: | retro_eeur_689 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_74296:55..509(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 68.59 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | SLVIPEKFQHILRVLNT-NIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
SLVIPEKFQHI.RVLNT..I....KIAFAITAIK..G.R...V.LRKADIDLT.RAGE.TED.V..VI.. | |
Retrocopy | SLVIPEKFQHIFRVLNT<HIYKSQKIAFAITAIKCMG*R*TYVLLRKADIDLTNRAGEFTEDKVTYVIMF |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL-ERLKKIRAHRGLRH-FWGLRV-RGQHTK |
.QNP.QYKIPDWFLN.Q.DVKD.KYSQ..AN.LDNKL.E.L.E.L.KIRAHRGL.H..WG..V..GQH.. | |
Retrocopy | KQNPHQYKIPDWFLNKQ*DVKDEKYSQIQANNLDNKLHEYL>EQLNKIRAHRGLCH>LWGCCV>VGQHIH |
Parental | TTGRRGRTVG-VSKKK |
TTG..G.T.G.VSKK. | |
Retrocopy | TTGQYGHTIG<VSKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |