RetrogeneDB ID: | retro_tbel_205 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1456:83746..84202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 88.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
M.L.IPEKFQHIL.VL.TNI.G.RKIAFAITAIKGVGR..AHVVLRKADIDLTKRAGELTE.EVERVI.. | |
Retrocopy | MPLAIPEKFQHIL*VLSTNINGWRKIAFAITAIKGVGRTHAHVVLRKADIDLTKRAGELTEEEVERVISS |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNPRQY..PDWFLNRQKDVKDG.YSQVLANGLDNKLREDLERLKKIRA.RGL.HFWGLRVRGQHTKTTG | |
Retrocopy | MQNPRQYDFPDWFLNRQKDVKDGNYSQVLANGLDNKLREDLERLKKIRAQRGLHHFWGLRVRGQHTKTTG |
Parental | RRGRTVGVSKKK |
.RGR.VGVSKKK | |
Retrocopy | HRGRIVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |