RetrogeneDB ID: | retro_tbel_3870 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_2519:74065..74438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 74.42 % |
Parental protein coverage: | 82.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | FAITAIKGVGRRYAHV-VLRKADIDLTKRAGELTE-DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKY |
.AITAIKGVG.RYA.V.VLRKA..DLTKRAGELTE..EVE.VITIM.NP.QYKIPDWFLNRQKDVKD.K. | |
Retrocopy | WAITAIKGVG*RYA*V<VLRKAETDLTKRAGELTE<GEVECVITIM*NPHQYKIPDWFLNRQKDVKDRKC |
Parental | SQVLANGLDN-KLREDLERLKKIRAHRGLRHFWGLRVRGQHTK-TTGRRGRTVGVSKKK |
SQVLANGLD......DLERLKKI..HRGLRHF....VRGQH...T.G..GR..GVSKKK | |
Retrocopy | SQVLANGLDS<RKHYDLERLKKI*THRGLRHFCEPLVRGQHIR>TIGCHGRAKGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |