RetrogeneDB ID: | retro_tbel_234 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1525:109394..109784(+) | ||
Located in intron of: | ENSTBEG00000001966 | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000002415 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 78.36 % |
Parental protein coverage: | 86.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GRRKIAFAITAIKGVGR-RYAHVVLRKADIDLTKRAGELTEDEVE-RVITIMQNPRQYKIPDWFLNRQKD |
GRR...FAITAIKGVGR.RYAH.VLR.AD....KRA.EL.E.EV..R.IT.M.NPRQY.IPDWFLNRQKD | |
Retrocopy | GRRR-PFAITAIKGVGR>RYAHGVLR-ADTGPHKRAAELPEEEVG>RAITVMHNPRQYEIPDWFLNRQKD |
Parental | VKDGKYS-QVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK |
V.DG..S.QVLANGLDN.LREDLER.KKIRA.RG.RHFWGLRVRGQHTK..GRRGRTVGVSKKK | |
Retrocopy | VRDGNHS>QVLANGLDNRLREDLERPKKIRACRGRRHFWGLRVRGQHTKAAGRRGRTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |