RetrogeneDB ID: | retro_eeur_380 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_275794:22509..22766(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 56.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRK-IAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
.SL.IPEKFQH.L.VLNTN.D..RK..AF.ITAI.GVG.R....VLRKADIDLT.RA.ELTEDEV..... | |
Retrocopy | ISLGIPEKFQHTLQVLNTNSDRIRK<TAFTITAI*GVG*RHTYGVLRKADIDLTNRARELTEDEVKGEFC |
Parental | IMQNPRQYKIPDWFLNR |
.MQNP.Q.KI.DWFLNR | |
Retrocopy | TMQNPYQSKITDWFLNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |