RetrogeneDB ID: | retro_sscr_2 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:28015648..28016107(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000008767 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSSCG00000001502 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_213940] |
Percent Identity: | 91.39 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
.SLVI.EKFQHILRVLNT.IDG..KIAFA.TAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVE.VITI | |
Retrocopy | LSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNP.QYKIPDWFLNRQKDVKDGKYSQVLANGLDNKL.ED.ERLKKIRAHRGLRHFWGLRV.GQHTKTTG | |
Retrocopy | MQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTG |
Parental | RRGRTVGVSKK |
RRG.TV.VSKK | |
Retrocopy | RRGHTVRVSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .53 RPM | 615 .61 RPM |
SRP014902_testis | 2 .69 RPM | 1480 .24 RPM |
SRP018288_heart | 0 .16 RPM | 293 .03 RPM |
SRP018288_kidney | 0 .49 RPM | 354 .32 RPM |
SRP018288_liver | 0 .96 RPM | 346 .68 RPM |
SRP018288_lung | 0 .00 RPM | 340 .61 RPM |
SRP018856_adipose | 2 .46 RPM | 1001 .25 RPM |
SRP035408_brain | 0 .89 RPM | 436 .67 RPM |
SRP035408_liver | 1 .00 RPM | 396 .57 RPM |