RetrogeneDB ID: | retro_dnov_2115 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_49002:12103..12343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSDNOG00000012084 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 52.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
.SLVIP..FQHILR.LNTN..GR.K.AFAITAIKGVG.RYAHVVLRKA.IDLTKRAGELTE.EVE.VI.I | |
Retrocopy | LSLVIPKNFQHILR*LNTNMEGRQKLAFAITAIKGVG*RYAHVVLRKAYIDLTKRAGELTEGEVEHVIII |
Parental | MQNPRQYKIP |
MQNP.QYK.P | |
Retrocopy | MQNPYQYKSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1233 .12 RPM |
SRP012922_cerebellum | 0 .00 RPM | 490 .76 RPM |
SRP012922_heart | 0 .00 RPM | 542 .95 RPM |
SRP012922_kidney | 0 .00 RPM | 1375 .55 RPM |
SRP012922_liver | 0 .00 RPM | 802 .67 RPM |
SRP012922_lung | 0 .00 RPM | 1687 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 918 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 2480 .37 RPM |