RetrogeneDB ID: | retro_sscr_112 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:75197862..75198197(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSSCG00000001502 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_213940] |
Percent Identity: | 82.91 % |
Parental protein coverage: | 76.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDG-RRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
MSL.IP.KFQHIL.V.....DG..RKIAFA.T.IKGVGRRYAHVVLRKADIDLTKRAG.LTEDEV.RVI. | |
Retrocopy | MSLEIPKKFQHIL*V----LDG<QRKIAFAVTVIKGVGRRYAHVVLRKADIDLTKRAGVLTEDEVKRVIA |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK |
IMQNPRQYKIP.WFLNRQ.D.KDGKYSQVLANGLDNKLREDLE.LK. | |
Retrocopy | IMQNPRQYKIPGWFLNRQRDMKDGKYSQVLANGLDNKLREDLE*LKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 615 .61 RPM |
SRP014902_testis | 0 .14 RPM | 1480 .24 RPM |
SRP018288_heart | 0 .05 RPM | 293 .03 RPM |
SRP018288_kidney | 0 .20 RPM | 354 .32 RPM |
SRP018288_liver | 0 .16 RPM | 346 .68 RPM |
SRP018288_lung | 0 .00 RPM | 340 .61 RPM |
SRP018856_adipose | 0 .06 RPM | 1001 .25 RPM |
SRP035408_brain | 0 .06 RPM | 436 .67 RPM |
SRP035408_liver | 0 .12 RPM | 396 .57 RPM |