RetrogeneDB ID: | retro_tbel_3625 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_147121:40467..40904(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 71.05 % |
Parental protein coverage: | 96.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | PEKFQHILRVLNT-NIDGRRKIAFAITAIK-GVGRRYAHVVL-RKADIDLTKRAGELTEDEVERVITIMQ |
PEKFQH.LRVLNT.NI.GR.K.AFA.T....GVGRRYAH.VL.R........RAG.L.E.E..RV.TIMQ | |
Retrocopy | PEKFQHSLRVLNT>NIGGRWKTAFATTTVR<GVGRRYAH-VL>RRKQTRTSQRAGALAEEEGGRVVTIMQ |
Parental | NPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKL-REDLERLKKIRAHRGLRHFWGLRVRGQHTK-TTG |
.PRQ.KIP.W.LNRQKDVK.GK.SQVLA.GLD.KL..EDLERLKK.RA.RGLRH.WGLRVRG.HT..T.G | |
Retrocopy | DPRQDKIPGWVLNRQKDVKGGKHSQVLASGLDIKL<AEDLERLKKGRARRGLRHLWGLRVRGRHTR<TAG |
Parental | RRGRTVGVSKKK |
R.GRTVGVSKKK | |
Retrocopy | RHGRTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |