RetrogeneDB ID: | retro_tbel_1818 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5826:1671723..1672078(-) | ||
Located in intron of: | ENSTBEG00000000792 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 56.45 % |
Parental protein coverage: | 79.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AFAITAIKGVGRRYAHVVLRKADIDLTK-RAGELTEDEV-ERVITIMQNPRQYKIPDWFLNRQKDVKDGK |
AFAITA.KGVG......V.R.....LT....G.LTE.E..ER.I.....PRQ..IPDW...RQ.DV.DGK | |
Retrocopy | AFAITATKGVGEG---LVVRHGEWPLTSPEGGGLTEEEG<ERAIAVVHGPRQDEIPDWVFSRQNDVEDGK |
Parental | YSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRV-RGQHTKTTGRRGRTVG |
.SQ.LA.GLDNKL...L.RLKK.RAHRG..HF.GL.V.RGQ.T.T.G...R.VG | |
Retrocopy | CSQGLASGLDNKLHRVLGRLKKTRAHRGVPHF*GLGV<RGQRTQTAG*CDRAVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |