RetrogeneDB ID: | retro_tbel_2682 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_116216:61045..61379(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 72.03 % |
Parental protein coverage: | 74.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | YAHVVLRKADIDLTKR-AGELTEDEVERVITIMQNPRQYKI-PDWFLNRQK-DVKDGKYS-QVLANGLDN |
..HVV.RKADI.LT.R.AGELTEDE.E.VITIMQNP.QYKI.P...LN..K.D.KD.KY...VLAN.LDN | |
Retrocopy | HTHVVWRKADIELTSR<AGELTEDEGECVITIMQNPHQYKI<PRLLLNGRK<DAKDRKYT<EVLANSLDN |
Parental | KLREDLERLKKIRAHRGLRHFWGLR-VRGQHTKTTGRRGRTVGVSKKK |
KL.EDLE.L.KI.AHRGL.HFWGL..V.GQHTKTTG.RG.TV.VSKKK | |
Retrocopy | KLCEDLESLRKIQAHRGLHHFWGLG<VQGQHTKTTGGRGYTVEVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |