RetrogeneDB ID: | retro_sscr_831 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:11861533..11861977(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSSCG00000001502 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_213940] |
Percent Identity: | 76.16 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIM |
SLVIPEKFQHIL.VLNT.I.G..K.AF.ITA.K.VG.R.A.VVL.KAD.DLTKR..EL.EDEVE.VITIM | |
Retrocopy | SLVIPEKFQHILQVLNTAIHGQWKTAFPITASKDVG*RHAQVVLTKADTDLTKREKELPEDEVECVITIM |
Parental | QNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGR |
QNP.QYK.PDWFLNRQK.VKDGK...V.ANGLD.KL.EDLE.LKKI.AH.GL.H.WGL.VRGQHTKTTG. | |
Retrocopy | QNPHQYKVPDWFLNRQKAVKDGK---VQANGLDDKLCEDLEPLKKIPAHSGLSHLWGLPVRGQHTKTTGH |
Parental | RGRTVGVSKKK |
RG.T.GVSKKK | |
Retrocopy | RGHTRGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 615 .61 RPM |
SRP014902_testis | 0 .00 RPM | 1480 .24 RPM |
SRP018288_heart | 0 .00 RPM | 293 .03 RPM |
SRP018288_kidney | 0 .10 RPM | 354 .32 RPM |
SRP018288_liver | 0 .00 RPM | 346 .68 RPM |
SRP018288_lung | 0 .00 RPM | 340 .61 RPM |
SRP018856_adipose | 0 .00 RPM | 1001 .25 RPM |
SRP035408_brain | 0 .00 RPM | 436 .67 RPM |
SRP035408_liver | 0 .00 RPM | 396 .57 RPM |