RetrogeneDB ID: | retro_tbel_2087 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_936:125612..126076(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 73.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQH---ILRVLNTNIDGRRKIAFAITAIK-GVGRRYAHVVLRKADIDLTKRAGELTEDEVER |
.SLVIPEKFQH....L.VLNTNI..R..IAFAITA...GVG.R..HVVLRKA...LTKRAGEL.EDEVE. | |
Retrocopy | ISLVIPEKFQHLL*VLKVLNTNIHRRQEIAFAITATR<GVG*RHSHVVLRKAELYLTKRAGELIEDEVEH |
Parental | VITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHT |
.IT..QN.R.YKIPD.FLNRQKD..DGKYSQVLA..LDNKL.E.LE.LKKI.AHRGL.HFWGL..RGQHT | |
Retrocopy | AITVIQNLR*YKIPDQFLNRQKDIRDGKYSQVLASCLDNKLHEALEKLKKIQAHRGLCHFWGLWLRGQHT |
Parental | KTTGRRGRTVGVSKKK |
KTTG..G.TV.VSKKK | |
Retrocopy | KTTGHCGCTVDVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |