RetrogeneDB ID: | retro_dnov_399 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4372:198944..199310(+) | ||
Located in intron of: | ENSDNOG00000014379 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSDNOG00000012084 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 84.43 % |
Parental protein coverage: | 80.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIM |
SLVIP.KFQHILR.LNTNIDG..K.AFAITAIK.VG.RYAHVVLRKAD.DLTKRAGELTEDEVE.VITI. | |
Retrocopy | SLVIPKKFQHILRILNTNIDGQQKTAFAITAIKSVG*RYAHVVLRKADTDLTKRAGELTEDEVEHVITIT |
Parental | QNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGL |
QNP.QYKIPDW.LNR..DVKDGKYSQVLANGLDNK..EDLE.LKKI.AHR.L | |
Retrocopy | QNPYQYKIPDWCLNR*RDVKDGKYSQVLANGLDNKFCEDLE*LKKIWAHRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 2 .72 RPM | 1233 .12 RPM |
SRP012922_cerebellum | 1 .51 RPM | 490 .76 RPM |
SRP012922_heart | 2 .09 RPM | 542 .95 RPM |
SRP012922_kidney | 6 .30 RPM | 1375 .55 RPM |
SRP012922_liver | 1 .86 RPM | 802 .67 RPM |
SRP012922_lung | 4 .12 RPM | 1687 .30 RPM |
SRP012922_quadricep_muscle | 1 .04 RPM | 918 .73 RPM |
SRP012922_spleen | 4 .69 RPM | 2480 .37 RPM |