RetrogeneDB ID: | retro_tbel_1806 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5788:56828..57187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 64.23 % |
Parental protein coverage: | 78.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | IKGVGRRYAHVVLRK-ADIDLTK-RAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA |
I.GVGRR.A.VVLRK..DIDLT..R.GELT..EVE.VIT.MQ.P..YKIPD.F..RQKDVKDGKYSQVLA | |
Retrocopy | IQGVGRRHADVVLRK<IDIDLTR<RVGELTQEEVEYVITVMQTPC*YKIPDLF*KRQKDVKDGKYSQVLA |
Parental | NGLDNKLREDLERLKKIRAHR-GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK |
N.LDNKL.E.LERLK.I..H...L.HFW...V.G.H.K.TG.....V...K.K | |
Retrocopy | NSLDNKLIEVLERLKEIWVHI>RLCHFWSVQV*GRHIKITGHHVPWVCPRKNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |