RetrogeneDB ID: | retro_dnov_1770 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_2923:37565..38010(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSDNOG00000012084 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 56.58 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LVIPEKFQHILRVLNT-NIDGRRKIAFA-ITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
LVIPEK.QH...VLN...IDGR...AFA..TA...VGR..AH.VLR.AD.....RAGEL.E.E......I | |
Retrocopy | LVIPEKSQHDV*VLNA<RIDGRWRTAFA<LTAFNVVGRGCAHAVLRNADLAVPERAGELAEAEARCAVAI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
.QN.RQ.KIP.WF.NRQKDVKDGK....LA......L.E.L..L.K.RA.RG...FW.LR...QH.K.TG | |
Retrocopy | TQNLRQCKIPGWFWNRQKDVKDGKHGGALASTVGHQLQEVLGGL-KVRARRGRHPFWRLRA*DQHPKNTG |
Parental | RRGRTVGVSKKK |
..G.TVGVSKKK | |
Retrocopy | HHGCTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1233 .12 RPM |
SRP012922_cerebellum | 0 .41 RPM | 490 .76 RPM |
SRP012922_heart | 0 .00 RPM | 542 .95 RPM |
SRP012922_kidney | 0 .00 RPM | 1375 .55 RPM |
SRP012922_liver | 0 .00 RPM | 802 .67 RPM |
SRP012922_lung | 0 .00 RPM | 1687 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 918 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 2480 .37 RPM |