RetrogeneDB ID: | retro_tbel_250 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1554:309353..309808(-) | ||
Located in intron of: | ENSTBEG00000006045 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHV-VLRKADIDLTKRAGELTEDEVERVIT |
MS.VIPEKFQHILRVL.TNIDGRRKIAFAITAIKGVGRRYAHV.V.RKAD.DLTKRAGEL.E.EVERVIT | |
Retrocopy | MSPVIPEKFQHILRVLHTNIDGRRKIAFAITAIKGVGRRYAHV<VSRKADMDLTKRAGELPEEEVERVIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTT |
.MQ.PRQYKIPDWFLNRQK..KDGKYSQVLAN.LDNKLREDLERLKKI.AHRGLRHFW.L.V.GQHTKTT | |
Retrocopy | VMQSPRQYKIPDWFLNRQKEIKDGKYSQVLANSLDNKLREDLERLKKILAHRGLRHFWSLLVQGQHTKTT |
Parental | GRRGRTVGVSKKK |
GRRG.TVGVSKKK | |
Retrocopy | GRRGCTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |