RetrogeneDB ID: | retro_tbel_295 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1671:374265..374718(-) | ||
Located in intron of: | ENSTBEG00000007061 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTBEG00000012708 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 84.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVG-RRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
MSLVIPEKF.HIL.VLNTNIDGRRKIAFAITAI.GVG.RR.AHVVLR.AD.DL..RAGEL.E.EVERVIT | |
Retrocopy | MSLVIPEKFEHIL*VLNTNIDGRRKIAFAITAINGVG<RRNAHVVLRRADMDLAERAGELAEEEVERVIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVR-GQHTKT |
.MQNPRQYKIPDWFLNR.KDVKD.KYSQVL.N.LDNK.REDLER.KK.RAHRGLRHFWGLRV..GQHTKT | |
Retrocopy | VMQNPRQYKIPDWFLNR*KDVKDRKYSQVLDNDLDNKPREDLERMKKTRAHRGLRHFWGLRVE<GQHTKT |
Parental | TGRRGRTV-GVSKKK |
TGR.GRT..GVSKKK | |
Retrocopy | TGRCGRTM<GVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |